Actions from msMovable Type Pro 4.382013-02-05T05:48:25Zhttps://blogs.perl.org/mt/mt-cp.fcgi?__mode=feed&_type=actions&blog_id=0&id=2329Commented on what to know about aligning in mstag:blogs.perl.org,2013:/users/ms//1768.4245#3543732013-02-05T05:48:25Zms
Thank you all for your comments.]]>
Commented on what to know about aligning in mstag:blogs.perl.org,2013:/users/ms//1768.4245#3543002013-02-05T04:59:55Zms
Thank you all for your comments.]]>
Posted what to know about aligning to mstag:blogs.perl.org,2013:/users/ms//1768.42452013-02-01T00:17:37Z2013-02-01T00:32:57ZHi I am a biologist not a bioinformatician, I have two group of sequences (they are nucleotide and in fasta format), each group includes around 40,000 sequences ranging from 100 bp to 12 kb. I want to know how can...mshttps://blogs.perl.org/mt/mt-cp.cgi?__mode=view&blog_id=1768&id=2329
Hi
I am a biologist not a bioinformatician, I have two group of sequences (they are nucleotide and in fasta format), each group includes around 40,000 sequences ranging from 100 bp to 12 kb. I want to know how can I align the sequences from a group to the another and find the best pair for each fragment. Can I do it through Perl? if so how can I do that? is there any softwares that can I use?
second Q
how can I find secondary structures of the sequences in each groups? which program should I use?
Thanks
MS ]]>