Continuing from extraction of coronavirus spike protein sequences I decided to compare them and see if any mutations could be found. To do this I needed to align sequences to each other and get multiple sequence alignment. There are many tools that might be used and I have chosen MUSCLE as it is fast, easy to use and accurate enough. However,…
As I started learning Perl I found out that there is a collection of Perl modules for bioinformatics tasks and it is called BioPerl. Intrigued I decided to try to use it for a simple task as it would help me in learning Perl. So the next question was: what task should I choose? Maybe download file with biological sequences, parse it and filter according some criteria? Thinking about this further I made a choice. I will work with sequences of infamous coronavirus which is more precisely named as
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