parser Archives

Of Go, C, Perl and fastq file conversion Vol II : the Jedi regex

By chrisarg on September 8, 2023 5:01 AM under bioinformatics, fasta, fastq, file parsing, parser, perl, sequencing

In the second part of this series about fast parsers for sequencing applications, I will review the code for the regex based parser. This is shown below (I use v5.38, as you should! because the year is 2023 and you should not have to type use strict; use warnings)